cellassign()
Annotate cells to cell types using cellassign
cellprobs()
Get the cell assignment probabilities of a cellassign fit
cellassign
celltypes()
Get the cell type assignments of a cellassign fit
example_TME_markers
Example tumour microevironment markers
example_cellassign_fit
Example cellassign fit
example_marker_mat
Example cell marker matrix
example_sce
Example SingleCellExperiment
holik_data
Example bulk RNA-seq data
marker_list_to_mat()
Convert a list of marker genes to a binary matrix
mleparams()
Get the MLE parameter list of a cellassign fit
print(<cellassign>)
Print a cellassign fit