Get the cell type assignments of a cellassign fit

Get the MLE cell type estimates for each cell

celltypes(x)

# S3 method for cellassign
celltypes(x)

Arguments

x	An object of class cellassign returned by a call to cellassign(...)

Value

A character vector with the MLE cell type for each cell

Examples

data(example_cellassign_fit)
celltypes(example_cellassign_fit)
#>   [1] "Group1" "Group2" "Group2" "Group1" "Group1" "Group1" "Group1" "Group2"
#>   [9] "Group1" "Group1" "Group2" "Group1" "Group2" "Group1" "Group1" "Group1"
#>  [17] "Group2" "Group1" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1"
#>  [25] "Group1" "Group2" "Group1" "Group2" "Group1" "Group2" "Group2" "Group2"
#>  [33] "Group1" "Group1" "Group2" "Group2" "Group1" "Group2" "Group2" "Group2"
#>  [41] "Group1" "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1"
#>  [49] "Group2" "Group2" "Group1" "Group1" "Group2" "Group1" "Group1" "Group1"
#>  [57] "Group2" "Group2" "Group1" "Group1" "Group2" "Group1" "Group2" "Group2"
#>  [65] "Group1" "Group2" "Group1" "Group1" "Group2" "Group1" "Group1" "Group1"
#>  [73] "Group2" "Group2" "Group2" "Group1" "Group1" "Group1" "Group2" "Group1"
#>  [81] "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1"
#>  [89] "Group2" "Group2" "Group2" "Group2" "Group1" "Group1" "Group2" "Group2"
#>  [97] "Group1" "Group2" "Group1" "Group2" "Group1" "Group2" "Group2" "Group2"
#> [105] "Group2" "Group1" "Group1" "Group2" "Group1" "Group1" "Group1" "Group1"
#> [113] "Group2" "Group2" "Group2" "Group1" "Group1" "Group2" "Group2" "Group1"
#> [121] "Group2" "Group2" "Group1" "Group1" "Group1" "Group2" "Group1" "Group1"
#> [129] "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1" "Group1"
#> [137] "Group1" "Group2" "Group1" "Group1" "Group1" "Group1" "Group2" "Group2"
#> [145] "Group1" "Group2" "Group1" "Group1" "Group2" "Group1" "Group1" "Group1"
#> [153] "Group1" "Group2" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1"
#> [161] "Group2" "Group1" "Group1" "Group2" "Group2" "Group1" "Group1" "Group1"
#> [169] "Group1" "Group2" "Group2" "Group1" "Group1" "Group1" "Group2" "Group2"
#> [177] "Group1" "Group1" "Group2" "Group2" "Group2" "Group2" "Group2" "Group2"
#> [185] "Group2" "Group1" "Group1" "Group2" "Group2" "Group2" "Group2" "Group1"
#> [193] "Group1" "Group1" "Group1" "Group1" "Group2" "Group1" "Group1" "Group2"
#> [201] "Group2" "Group2" "Group2" "Group1" "Group2" "Group2" "Group2" "Group2"
#> [209] "Group1" "Group1" "Group1" "Group2" "Group1" "Group1" "Group2" "Group1"
#> [217] "Group2" "Group1" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1"
#> [225] "Group2" "Group2" "Group1" "Group2" "Group1" "Group2" "Group1" "Group1"
#> [233] "Group2" "Group1" "Group1" "Group2" "Group2" "Group2" "Group1" "Group2"
#> [241] "Group2" "Group2" "Group1" "Group1" "Group1" "Group2" "Group1" "Group2"
#> [249] "Group1" "Group2" "Group1" "Group1" "Group2" "Group1" "Group2" "Group2"
#> [257] "Group1" "Group1" "Group2" "Group1" "Group2" "Group2" "Group2" "Group2"
#> [265] "Group2" "Group1" "Group2" "Group1" "Group2" "Group1" "Group1" "Group1"
#> [273] "Group2" "Group1" "Group1" "Group1" "Group2" "Group1" "Group1" "Group2"
#> [281] "Group1" "Group1" "Group2" "Group2" "Group1" "Group2" "Group2" "Group2"
#> [289] "Group1" "Group1" "Group2" "Group1" "Group2" "Group1" "Group1" "Group1"
#> [297] "Group2" "Group1" "Group2" "Group1" "Group2" "Group2" "Group1" "Group1"
#> [305] "Group1" "Group2" "Group2" "Group2" "Group2" "Group1" "Group1" "Group2"
#> [313] "Group2" "Group1" "Group2" "Group2" "Group2" "Group2" "Group2" "Group2"
#> [321] "Group2" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1" "Group2"
#> [329] "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1" "Group1"
#> [337] "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1"
#> [345] "Group1" "Group2" "Group1" "Group1" "Group1" "Group2" "Group1" "Group1"
#> [353] "Group1" "Group1" "Group1" "Group1" "Group2" "Group2" "Group2" "Group1"
#> [361] "Group2" "Group1" "Group2" "Group2" "Group1" "Group2" "Group1" "Group1"
#> [369] "Group2" "Group1" "Group2" "Group1" "Group1" "Group1" "Group1" "Group1"
#> [377] "Group2" "Group2" "Group2" "Group2" "Group1" "Group1" "Group2" "Group2"
#> [385] "Group1" "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1"
#> [393] "Group1" "Group2" "Group2" "Group1" "Group2" "Group2" "Group1" "Group2"
#> [401] "Group2" "Group2" "Group1" "Group2" "Group1" "Group2" "Group2" "Group2"
#> [409] "Group2" "Group2" "Group2" "Group2" "Group1" "Group1" "Group1" "Group1"
#> [417] "Group2" "Group2" "Group2" "Group2" "Group2" "Group1" "Group2" "Group1"
#> [425] "Group2" "Group1" "Group2" "Group2" "Group1" "Group1" "Group1" "Group2"
#> [433] "Group1" "Group2" "Group1" "Group2" "Group2" "Group2" "Group2" "Group1"
#> [441] "Group1" "Group1" "Group1" "Group1" "Group1" "Group1" "Group1" "Group2"
#> [449] "Group2" "Group2" "Group2" "Group1" "Group1" "Group1" "Group2" "Group1"
#> [457] "Group2" "Group1" "Group2" "Group2" "Group1" "Group1" "Group1" "Group1"
#> [465] "Group2" "Group1" "Group1" "Group2" "Group2" "Group2" "Group2" "Group2"
#> [473] "Group2" "Group1" "Group2" "Group1" "Group1" "Group2" "Group2" "Group1"
#> [481] "Group2" "Group2" "Group2" "Group1" "Group1" "Group2" "Group1" "Group1"
#> [489] "Group2" "Group2" "Group1" "Group2" "Group2" "Group1" "Group1" "Group2"
#> [497] "Group1" "Group2" "Group2" "Group1"